「SGE用スクリプトファイルをPBS用に書き換える方法」の版間の差分
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| 20行目: | 20行目: | ||
<tr><td>Standard output file</td><td> #PBS -o [file] </td><td>#$ -o [path]</td></tr> | <tr><td>Standard output file</td><td> #PBS -o [file] </td><td>#$ -o [path]</td></tr> | ||
<tr><td>Standard error </td><td>#PBS -e [file] </td><td>#$ -e [path]</td></tr> | <tr><td>Standard error </td><td>#PBS -e [file] </td><td>#$ -e [path]</td></tr> | ||
<tr><td>Array job </td><td>#PBS -t [# - #] </td><td>#$ -t [# - #]</td></tr> | |||
<tr><td>Array number Variable name</td><td>${PBS_ARRAYID}</td><td>${SGE_TASK_ID}</td></tr> | |||
<tr><td>Copy environment</td><td> #PBS -V </td><td>#$ -V</td></tr> | <tr><td>Copy environment</td><td> #PBS -V </td><td>#$ -V</td></tr> | ||
<tr><td>Notification event </td><td>#PBS -m abe </td><td>#$ -m abe</td></tr> | <tr><td>Notification event </td><td>#PBS -m abe </td><td>#$ -m abe</td></tr> | ||
| 28行目: | 30行目: | ||
<tr><td>Node usage </td><td>#PBS -l naccesspolicy=singlejob </td><td>n/a</td></tr> | <tr><td>Node usage </td><td>#PBS -l naccesspolicy=singlejob </td><td>n/a</td></tr> | ||
<tr><td>Memory requirement </td><td>#PBS -l mem=XXXXmb </td><td>#$ -mem [#]G</td></tr> | <tr><td>Memory requirement </td><td>#PBS -l mem=XXXXmb </td><td>#$ -mem [#]G</td></tr> | ||
</table><br> | |||
* -cwd が使えなくなる | |||
*代替の記述 | |||
cd $PBS_O_WORKDIR | |||
2018年6月1日 (金) 05:09時点における版
主なコマンド Common command
| PBS command | SGE command | |
|---|---|---|
| Job submission | qsub [scriptfile] | qsub [scriptfile] |
| Job deletion | qdel [job_id] | qdel [job_id] |
| Job status (for user) | qstat -u [username] | qstat -u [username] |
| Extended job status | qstat -f [job_id] | qstat -f -j [job_id] |
| Hold a job temporarily | qhold [job_id] | qhold [job_id] |
| Release job hold | qrls [job_id] | qrls [job_id] |
| List of usable queues | qstat -Q | qconf -sql |
リソース指定 Resource specifications
| PBS command | SGE command | |
|---|---|---|
| Queue | #PBS -q [queue] | #$ -q [queue] |
| Nodes | #PBS -l nodes=[#] | n/a |
| Processors | #PBS -l ppn=[#] | #$ -pe [pe_name] [#] |
| Wall clock limit | #PBS -l walltime=[hh:mm:ss] | #$ -l time=[hh:mm:ss] |
| Standard output file | #PBS -o [file] | #$ -o [path] |
| Standard error | #PBS -e [file] | #$ -e [path] |
| Array job | #PBS -t [# - #] | #$ -t [# - #] |
| Array number Variable name | ${PBS_ARRAYID} | ${SGE_TASK_ID} |
| Copy environment | #PBS -V | #$ -V |
| Notification event | #PBS -m abe | #$ -m abe |
| Email address | #PBS -M [email] | #$ -M [email] |
| Job name | #PBS -N [name] | #$ -N [name] |
| Job restart | #PBS -r [y|n] | #$ -r [yes|no] |
| Move current directory | n/a | #$ -cwd |
| Node usage | #PBS -l naccesspolicy=singlejob | n/a |
| Memory requirement | #PBS -l mem=XXXXmb | #$ -mem [#]G |
- -cwd が使えなくなる
- 代替の記述
cd $PBS_O_WORKDIR