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*インストール済みソフトウェア（分子生物学） | *インストール済みソフトウェア（分子生物学） | ||
abyss [http://www.bcgsc.ca/platform/bioinfo/software/abyss] Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler | '''abyss''' [http://www.bcgsc.ca/platform/bioinfo/software/abyss] Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler | ||
allpaths-lg [http://www.broadinstitute.org/software/allpaths-lg/blog/] The new short read genome assembler | '''allpaths-lg''' [http://www.broadinstitute.org/software/allpaths-lg/blog/] The new short read genome assembler | ||
blast The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences | '''blast''' The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences | ||
blast+ | '''blast+''' | ||
blat | '''blat''' [http://genome.ucsc.edu/cgi-bin/hgBlat?command=start] BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more | ||
bowtie | '''bowtie''' | ||
bwa-0.5.9 | bwa-0.5.9 | ||
CAP3 | CAP3 | ||
2012年6月1日 (金) 01:32時点における版
- インストール済みソフトウェア（分子生物学）
abyss [1] Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler allpaths-lg [2] The new short read genome assembler blast The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences blast+ blat [3] BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more bowtie bwa-0.5.9 CAP3 cd-hit clustalw clustalw2 consed cufflinks dbget denovo2 EMBOSS fasta Gblocks genemark genscanlinux glimmer hmmer IGV lastz mafft meme mrbayes muscle njplot paup Phred+Phrap phylip phyml raxml readseq samtools soap sparsehash-1.11 stacks stacks-0.996 t_coffee tgicl_linux tophat tree-puzzle trinityrnaseq velvet
- インストール済みソフトウェア（その他）
Gene Spring （端末室 Windowsマシン上 所内のみ利用可） MATLAB（同上） MATLAB Distributed Computing Server Pipeline Pilot
- 他一般ソフトウェア、プログラム言語
csh tcsh zsh bash perl ruby python gcc gcc ver.4 icc