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'''blast+''' | '''blast+''' | ||
'''blat''' [http://genome.ucsc.edu/cgi-bin/hgBlat?command=start] BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more | '''blat''' [http://genome.ucsc.edu/cgi-bin/hgBlat?command=start] BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more | ||
'''bowtie''' | '''bowtie''' [http://bowtie-bio.sourceforge.net/index.shtml] Bowtie is an ultrafast, memory-efficient short read aligner | ||
bwa- | '''bwa''' [http://bio-bwa.sourceforge.net/] Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence | ||
CAP3 | CAP3 | ||
cd-hit | cd-hit | ||
2012年6月1日 (金) 01:34時点における版
- インストール済みソフトウェア（分子生物学）
abyss [1] Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler allpaths-lg [2] The new short read genome assembler blast The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences blast+ blat [3] BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more bowtie [4] Bowtie is an ultrafast, memory-efficient short read aligner bwa [5] Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence CAP3 cd-hit clustalw clustalw2 consed cufflinks dbget denovo2 EMBOSS fasta Gblocks genemark genscanlinux glimmer hmmer IGV lastz mafft meme mrbayes muscle njplot paup Phred+Phrap phylip phyml raxml readseq samtools soap sparsehash-1.11 stacks stacks-0.996 t_coffee tgicl_linux tophat tree-puzzle trinityrnaseq velvet
- インストール済みソフトウェア（その他）
Gene Spring （端末室 Windowsマシン上 所内のみ利用可） MATLAB（同上） MATLAB Distributed Computing Server Pipeline Pilot
- 他一般ソフトウェア、プログラム言語
csh tcsh zsh bash perl ruby python gcc gcc ver.4 icc