ソフトウェア
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- インストール済みソフトウェア(分子生物学)
abyss [1] Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler allpaths-lg [2] The new short read genome assembler blast The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences blast+ blat [3] BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more bowtie [4] Bowtie is an ultrafast, memory-efficient short read aligner bwa [5] Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence CAP3 cd-hit clustalw clustalw2 consed cufflinks dbget denovo2 EMBOSS fasta Gblocks genemark genscanlinux glimmer hmmer IGV lastz mafft meme mrbayes muscle njplot paup Phred+Phrap phylip phyml raxml readseq samtools soap sparsehash-1.11 stacks stacks-0.996 t_coffee tgicl_linux tophat tree-puzzle trinityrnaseq velvet
- インストール済みソフトウェア(その他)
Gene Spring (端末室 Windowsマシン上 所内のみ利用可) MATLAB(同上) MATLAB Distributed Computing Server Pipeline Pilot
- 他一般ソフトウェア、プログラム言語
csh tcsh zsh bash perl ruby python gcc gcc ver.4 icc